A palindrome in DNA is a sequence of base pairs that reads the same on both strands when read in the same direction (5′ → 3′).
Definitions [3]
Define.
Biotechnology
The technique of bringing about improvements in living organisms by genetic modifications and hybridization, for the welfare of human beings is known as ‘Biotechnology’.
Definition: Biotechnology
The European Federation of Biotechnology (EFB) defined biotechnology as ‘the integration of natural science and organisms, cells, parts thereof, and molecular analogues for products and services'.
Definition: Palindrome
Key Points
Key Points: Biotechnology
- Biotechnology, a term coined by Karl Ereky in 1919, is the use of biological systems and genetic modifications to develop products and services for human welfare.
- Traditional biotechnology relies on small-scale, natural processes like fermentation (e.g., producing curd and wine), whereas modern biotechnology operates on a large scale.
- Modern biotechnology is fundamentally driven by two core techniques: genetic engineering (the targeted alteration of DNA and RNA) and bioprocess engineering.
- The field experienced a major breakthrough with the development of recombinant DNA technology by Cohen and Boyer in 1973.
- By integrating disciplines such as molecular biology and biochemistry, biotechnology enables crucial applications in both medicine (antibiotics, vaccines, insulin) and agriculture (high-yield, disease-resistant crops).
Key Points: Principles of Processes of Biotechnology
- Two Core Techniques – Modern biotechnology is based on (i) genetic engineering and (ii) chemical engineering.
- Genetic Engineering – Deals with the alteration of DNA and RNA to achieve desired results in a directed, predetermined way using in vitro processes.
- Chemical Engineering - Maintains a sterile environment for manufacturing useful products like vaccines, antibodies, enzymes, vitamins, and therapeutics.
- What Genetic Engineering Involves - Repairing/replacing defective genes, synthesising new genes, transferring genes, combining genes from two organisms, and altering the genotype.
- Other Names for Genetic Engineering – Also called Recombinant DNA (rDNA) Technology or Gene Cloning, as it involves transferring a gene via a suitable vector to a new location or organism.
Key Points: Restriction Enzymes
- Restriction enzymes, often called "molecular scissors", are specialised endonucleases that cut DNA at specific internal positions to facilitate genetic engineering.
- Over 900 restriction enzymes, including the first discovered Hind II, have been successfully isolated from more than 230 strains of bacteria.
- These enzymes are named using a standard convention based on the genus, species, strain, and discovery order of the source bacterium, such as EcoRI.
- They function by inspecting DNA to find specific palindromic nucleotide sequences, which are base pair sequences that read the same on both strands in the same orientation.
- Type II restriction enzymes are the primary ones used in genetic manipulation because they reliably recognise and cut at very specific target sequences.
- Cutting the DNA slightly away from the centre of a palindrome creates "sticky ends", which are single-stranded overhangs that easily bond with complementary DNA using the enzyme DNA ligase.
- The resulting DNA fragments are separated by size using gel electrophoresis, where smaller negatively charged fragments move faster through an agarose matrix toward an anode.
- The separated DNA is visualised as bright orange bands under UV light after ethidium bromide staining and is carefully extracted from the gel through a process called elution.
Key Points: Cloning Vectors
- Vectors (like plasmids and bacteriophages) are DNA molecules used to carry and replicate foreign DNA inside a host cell.
- An ideal vector must have an origin of replication (ori), selectable markers, and specific cloning sites.
- pBR322 is a widely used standard bacterial plasmid vector containing these essential features.
- Recombinant DNA is identified using insertional inactivation (e.g., in blue-white selection, recombinant colonies appear white due to a disrupted gene).
- Higher organisms require specific vectors: Ti plasmids for plants and modified retroviruses for animals.
Key Points: Competent Host (For Transformation with Recombinant DNA)
- DNA is hydrophilic, so it cannot enter cells easily; bacteria are made competent using Ca²⁺ ions.
- Cells are treated with cold (ice) and heat shock (42°C) to help the uptake of recombinant DNA.
- Transformation is the process of introducing recombinant DNA into bacterial cells.
- Microinjection → DNA is directly injected into the nucleus of animal cells.
- Biolistics (gene gun) and disarmed pathogens are used to transfer DNA into plant and host cells.
Key Points: Processes of Recombinant DNA Technology
- Cells are first broken open using specific enzymes (such as lysozyme for bacteria) to successfully isolate the genetic material.
- The purified DNA is precisely cut at specific locations using restriction enzymes, which act as "molecular scissors" to extract the desired gene.
- The resulting DNA fragments are separated by size using gel electrophoresis, and the specific target sequence is extracted.
- The desired gene is then amplified into millions of copies using the polymerase chain reaction (PCR) technique.
- The amplified gene is joined to a carrier vector using the enzyme DNA ligase to construct a new molecule called recombinant DNA.
- This recombinant DNA is introduced into a chemically treated, competent host cell (such as a bacterium) through a process known as transformation.
- For commercial use, these transformed host cells are cultured on a massive scale inside large, environmentally controlled vessels called bioreactors.
- The final therapeutic product undergoes downstream processing, which involves rigorous separation, purification, and quality testing before packaging.
Important Questions [65]
- What is the cell that receives a recombinant gene called?
- State the Role of DNA Ligase in Biotechnology.
- Explain the Work Carried Out by Cohen and Boyer that Contributed Immensely in Biotechnology.
- Name the genes responsible for making Bt cotton plants resistant to bollworm attack. How do such plants attain resistance against bollworm attacks? Explain.
- Rearrange the Following in the Correct Sequence to Accomplish an Important Biological Reaction:
- How Has the Development of Bioreactor Helped in Biotechnology?
- Name the Most Commonly Used Bioreactor and Describe Its Working.
- Retroviruses have no DNA. However, the DNA of the infected host cell does possess viral DNA. How is it possible?
- Cloning of genes, play a very significant role in genetic engineering, helping the transfer of desirable foreign genes into different hosts.
- One of the Major Contributions of Biotechnology is to Develop Pest-resistant Varieties of Cotton Plants. Explain How It Has Been Made Possible.
- Give a reason why : Proteases are added during the isolation of DNA for genetic engineering.
- Name and Explain the Technique Used for Separating Dna Fragments and Making Them Available for Biotechnology Experiments.
- Name the enzymes that are used for the isolation of DNA from bacterial and fungal cells for recombinant DNA technology.
- How Does a Restriction Nuclease Function? Explain
- Name and Describe the Technique that Helps in Separating the Dna Fragments Formed by the Use of Restriction Endonuclease
- Distinguish between exonuclease and endonuclease.
- State the importance of elution in this process.
- What is elution?
- How Does Restriction Endonuclease Function?
- Given below is the stepwise schematic representation of the process of electrophoresis. Identify the 'alphabets' representing i. Anode end ii. smallest/lightest DNA strand in the matrix
- Explain the Roles of the Following with the Help of an Example Each in Recombinant Dna Technology : Restriction Enzymes
- Give a reason why : Single cloning site is preferred in a vector.
- Given below is the restriction site of a restriction endonuclease Pst-I and the cleavage sites on a DNA molecule. G 3'5A′ C−T−G−C−A −↓G 3' 3A′ G−↑ A−C−G−T−C 5A′
- Explain with the Help of a Suitable Example the Naming of a Restriction Endonuclease.
- How are DNA fragments visualised once they are separated by gel electrophoresis?
- Answer the Following Question. Write the Use of Restriction Endonuclease in the Formation of Recombinant Dna.
- Answer the Following Question. Explain the Significance of Palindromic Nucleotide Sequence in the Formation of Recombinant Dna.
- How Are 'Sticky Ends' Formed on a Dna Strand? Why Are They So Called?
- Why is the enzyme cellulase needed for isolating genetic material from plant cells and not form the animal cells?
- What are the protruding and hanging stretches of DNA produced by these restriction enzymes called? Describe their role in the formation of rDNA.
- Mention the Difference in the Mode of Action of Exonuclease and Endonuclease.
- Suggest a technique to a researcher who needs to separate fragments of DNA.
- 'EcoRl' has played very significant role in r-DNA technology. Explain the convention for naming EcoRI. Write the recognition site and the cleavage sites of this restriction endonuclease.
- State the principle involved in separation of DNA fragments using gel electrophoresis.
- Name the selectable markers in the cloning vector pBR322. Mention the role they play.
- State How Has Agrobacterium Tumifaciens Been Made a Useful Cloning Vector to Transfer Dna to Plant Cells
- Draw a Schematic Sketch of Pbr 322 Plasmid and Label the Following in It
- Why is the coding sequence of an enzyme β-galactosidase a preferred selectable marker in comparison to the ones named above?
- Write the role of ‘restriction sites’ in the cloning vector pBR322.
- What is ‘Ori’ ? State Its Importance During Cloning of a Vector.
- Explain the Importance of ‘Selectable Marker’, with the Help of a Suitable Example.
- Answer the Following Question. β Galactosidase Enzyme is Considered a Better Selectable Marker. Justify the Statement.
- Answer the Following Question. Expand ‘Yac’ and Mention What It Was Used For.
- How does the β-galactosidase coding sequence act as a selectable marker? Why is it a preferred selectable marker to antibiotic resistance genes? Explain.
- Non viral and non vector methods are sometimes used to transfer genes or alien DNA into a plant cell. Explain one such method used in genetic engineering.
- Why Should a Bacterium Be Made ‘Competent’ ?
- State the role of “biolistic gun” in biotechnology experiments.
- Write the steps you would suggest to be undertaken to obtain a foreign-gene-product.
- Explain the Role of ‘Microinjection’ and ‘Gene Gun’ in Biotechnology
- Why must a cell be made ‘competent’ in biotechnology experiments? How does calcium ion help in doing so?
- Mention the Type of Host Cells Suitable for the Gene Guns to Introduce an Alien Dna.
- Explain the Roles of the Following with the Help of an Example Each in Recombinant Dna Technology : Plasmids
- State the advantage of using Thermostable DNA polymerase.
- Bioreactors are the containment vehicles of any biotechnology-based production process.
- Suggest and Describe a Technique to Obtain Multiple Copies of a Gene of Interest in Vitro.
- Name two commonly used bioreactors.
- Answer the Following Question: Describe the Formation of Recombinant Dna by the Action of Ecori.
- Describe the process of amplification of the “gene of interest” using the PCR technique.
- Prepare a Flow Chart in Formation of Recombinant Dna by the Action of Restriction Endonuclease Enzyme Ecori.
- State the Importance of Using a Bioreactor.
- Read the paragraph given below and answer and questions that follow: Enzyme Taq polymerase, is extracted from a eubacterial microorganism Thermus aquaticus from Yellowstone National Park in Montana,
- Read the following paragraph and answer the questions that follow: Biotechnology revolves around the "gene of interest", with an objective to open various avenues for human welfare in health, medicine
- Draw a Labelled Sketch of Sparged-stirred-tank Bioreactor. Write Its Application.
- Assertion (A): Synthetic oligonucleotide polymers are used during Annealing in a PCR. Reason (R): The primers bind to the double stranded DNA at their complementary regions.
- Write the scientific name of the source organism of the thermostable DNA polymerase used in PCR.
